PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G03530.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 339aa    MW: 36405.5 Da    PI: 7.3227
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G03530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.42.1e-10168226563
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      kr++r   NR +A rs +RK +++ eLe+kv++L++e ++L  +l  l+   + l++e+
  LPERR12G03530.1 168 KRAKRILANRQSAARSKERKIKYTSELERKVQTLQTEATTLSAQLTLLQRDTSGLTAEN 226
                      9**********************************************999888888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-15164228IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.024166229IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-10168219No hitNo description
Gene3DG3DSA:1.20.5.1708.0E-11168222No hitNo description
PfamPF001704.2E-9168225IPR004827Basic-leucine zipper domain
CDDcd147034.03E-23169218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007231Biological Processosmosensory signaling pathway
GO:0008272Biological Processsulfate transport
GO:0009294Biological ProcessDNA mediated transformation
GO:0009652Biological Processthigmotropism
GO:0009970Biological Processcellular response to sulfate starvation
GO:0045596Biological Processnegative regulation of cell differentiation
GO:0051170Biological Processnuclear import
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0051019Molecular Functionmitogen-activated protein kinase binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDGRFPLPPA AAGGGRVGHH RRAHSETFLR LPDADLLLDP EGDFSFSDLD FPSLSDDSTP  60
AISDPTPPPP PPMAAAASAA SPSPAPRPPG GAHMRSLSLD TAFFENFSLQ GGGGGGGSGG  120
GGHKRSGSMD GVSSPFEGES ALSGGLPDYA KKAMPVERIA ELALIDPKRA KRILANRQSA  180
ARSKERKIKY TSELERKVQT LQTEATTLSA QLTLLQRDTS GLTAENRELK LRLQSMEEQA  240
KLRDALNEAL REEVQRLKIA AGQAPNMNGN PFNGGLQQQI PPYYTQQQQQ QQMSYLGGQH  300
AQQRHPSHQQ SSSNGGQSLS GQSLNDSMDF MRGEIQRPY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00184DAPTransfer from AT1G43700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0659950.0AK065995.1 Oryza sativa Japonica Group cDNA clone:J013048G15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618202.10.0PREDICTED: transcription factor VIP1
SwissprotQ9MA752e-74VIP1_ARATH; Transcription factor VIP1
TrEMBLA0A0D9XX480.0A0A0D9XX48_9ORYZ; Uncharacterized protein
STRINGLOC_Os12g06520.10.0(Oryza sativa Japonica Group)
STRINGORGLA12G0036800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19253892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43700.18e-49VIRE2-interacting protein 1